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  1. Jalview
  2. JAL-2241

NPE raised when creating a new view for an alignment with associated structure data

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 2.10.0
    • Fix Version/s: 2.10.0b1
    • Component/s: jvdesktop
    • Labels:
      None

      Description

      To reproduce, import the example_2_7 project file, and create a new view.


      java.lang.NullPointerException
      at jalview.gui.Jalview2XML.copyJarEntry(Jalview2XML.java:2712)
      at jalview.gui.Jalview2XML.loadPDBFile(Jalview2XML.java:2672)
      at jalview.gui.Jalview2XML.loadFromObject(Jalview2XML.java:3013)
      at jalview.gui.Jalview2XML.copyAlignPanel(Jalview2XML.java:5347)
      at jalview.gui.AlignFrame.newView(AlignFrame.java:2729)
      at jalview.gui.AlignFrame.newView_actionPerformed(AlignFrame.java:2712)
      at jalview.jbgui.GAlignFrame$138.actionPerformed(GAlignFrame.java:2107)
      at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
      at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
      at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)

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          Issue Links

          is duplicated by

          Task - A task that needs to be done. JAL-2266 Handle NullPointerException in New View after viewing a PDB structure

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-1746 'New View' fails with NullPointer if Chimera has been opened

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: