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  1. Jalview
  2. JAL-2137

STRUCTMODEL statement to allow sequence/structure models to be imported via Jalview annotation file

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
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      Description

      A new Jalview annotation file statement 'STRUCTMODEL' allows specification of a 3D structure file (via resolvable URI) with a specified Query sequence. The model name is used to generate a new sequence on the alignment which is directly associated with the 3D model, and a second URI specifies the map between the model and some template sequence of the same name.

      The result is a new 'cached' structure associated with the Query sequence, and a new template sequence of the same name added to the alignment according to the given pairwise alignment, which also receives any transferred annotation.

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Created:
                Updated: