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  1. Jalview
  2. JAL-2118

annotation sorting reorders annotation row after it is created and placed

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.9, 2.10.0
    • Fix Version/s: 2.10.0
    • Component/s: gui
    • Labels:

      Description

      If 'sort annotation by' options are enabled to place autocalculated annotation before manual annotation, and then a new annotation row is created something confusing happens.
      1. after hitting OK to create the row, the annotation is inserted in the first row of the panel.
      * the height of the panel isn't adjusted to make all the rows visible.
      2. If the user then selects a portion of the new row to interactively annotate, Jalview immediately sorts the annotations.
      * sorting moved the interactively created annotation to the bottom of the panel, and since the panel height wasn't adjusted it was obscured.
      * red highlights are not shown in the right place.

      this basically makes the first step in interactive annotation creation unusable.

        Attachments

          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-1799 annotation panel height isn't set to minimise white space when view opened/resized

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2208 Selected region on annotation row doesn't move with row

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-1841 RNA structure consensus is only calculated for base pairs marked with (), and counts are buggy

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2209 adjust annotation vertical scroll to show currently selected/operated on annotation after a row-sort

          • Major - Major loss of function.
          • Open

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3081 Let manual annotation ordering take precedence over automatic

          • Major - Major loss of function.
          • Ready for testing

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: