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  1. Jalview
  2. JAL-2069

Colour features by attribute value

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Duplicate
    • Affects Version/s: None
    • Fix Version/s: 2.11.0
    • Component/s: None
    • Labels:
      None

      Description

      Provide a means for users to colour a feature based on the value of a selected attribute.
      e.g.
      - as an alternative to 'Colour by Label', select 'Colour by Consequence Type'
      - as an alternative to 'Colour/threshold by Score', select 'Colour/threshold by AF (Allele Frequency)'

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          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-2820 Feature tooltip show attribute value (if coloured by attribute)

          • Major - Major loss of function.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2041 clinical significance field not preserved in variant annotation from Ensembl

          • Major - Major loss of function.
          • Closed

          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-2744 User controls to view and/or analyse by feature attributes

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-2808 Filter features by attribute value conditions

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2060 'Graduated colour' option not offered if feature score is Float.NaN

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-3010 Make Feature Settings 'ontology aware'

          • Critical - Crashes, loss of data, severe memory leak.
          • In Progress

          Task - A task that needs to be done. JAL-2843 Provide persistence for filter or colour by feature attribute

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2835 Support visualisation of VEP (variant effect predictor) data

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2593 Avoid redundant rendering of co-located features

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3186 Remove 'Variable Colour' from Sequence Features popup menu

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: