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  1. Jalview
  2. JAL-1957

Provide multi-chain mapping for UniProt sequences using SIFTs

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.0
    • Component/s: None
    • Labels:
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      Description

      This will enable mapping multi-chain mapping between a single UniProt sequence and multiple PDB chains using SIFTS.

      For instance when lgul_human sequence is fetched from UniProt only a sequence is created. However, when you view the PDB structure for it (1qip), you will discover 4 chains that could be mapped to the same sequence. Current Jalview implementation maps to the structure chain with the maximum match and leaves the rest of the structure chains unmapped.

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              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              tcnofoegbu Tochukwu Charles N Ofoegbu
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                Updated:
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