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  1. Jalview
  2. JAL-1944

Export As gives an error when exporting with hidden sequences but not hidden columns

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.9.0b2
    • Fix Version/s: 2.10.0
    • Component/s: jvdesktop
    • Labels:

      Description

      Open e.g. uniref50.fa.
      Hide one or more sequences, and one or more columns.
      File | Output to Textbox | any format
      Tick 'export hidden sequences' but not 'export hidden columns'.
       java.lang.ArrayIndexOutOfBoundsException: 14
      at jalview.io.FormatAdapter.replaceStrings(FormatAdapter.java:132)
      at jalview.io.FormatAdapter.formatSequences(FormatAdapter.java:283)
      at jalview.io.FormatAdapter.formatSequences(FormatAdapter.java:241)
      at jalview.gui.AlignFrame.outputText_actionPerformed(AlignFrame.java:1247)

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          Issue Links

          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-1780 Export Settings for flatfile output

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: