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  1. Jalview
  2. JAL-1933

Occupancy annotation row

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.2
    • Component/s: analysis
    • Labels:

      Description

      An occupancy annotation row would show the number of gaps in a particular column. This value is already calculated - we just need to allow it to be displayed.

      One gotcha here: occupancy has a high dynamic range for large alignments, so a linear scale or simple logarithmic scale probably wont work, so we should use Horizon Graphs (see Heer's talk, VIZBI 2014).

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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