Details
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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Won't Fix
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Affects Version/s: 2.8.2, 2.8.2b1, 2.9
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Fix Version/s: None
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Component/s: data retrieval services
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Labels:None
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Epic Link:
Description
The status of the PDB entry 3j3q is 'REL' and Jalview is still unable to retrieve the entry. It fails with the exception:
INFO : jalview.bin.Jalview - Error retrieving 3j3q from PDB
java.lang.Exception: No PDB Records for 3j3q chain ' '
at jalview.ws.dbsources.Pdb.getSequenceRecords(Pdb.java:204)
at jalview.gui.SequenceFetcher.run(SequenceFetcher.java:579)
at java.lang.Thread.run(Thread.java:745)
INFO - Error retrieving 3j3q from PDB
java.lang.Exception: No PDB Records for 3j3q chain ' '
at jalview.ws.dbsources.Pdb.getSequenceRecords(Pdb.java:204)
at jalview.gui.SequenceFetcher.run(SequenceFetcher.java:579)
at java.lang.Thread.run(Thread.java:745)
This suggest thatJAL-1852 may not be the ideal solution.
INFO : jalview.bin.Jalview - Error retrieving 3j3q from PDB
java.lang.Exception: No PDB Records for 3j3q chain ' '
at jalview.ws.dbsources.Pdb.getSequenceRecords(Pdb.java:204)
at jalview.gui.SequenceFetcher.run(SequenceFetcher.java:579)
at java.lang.Thread.run(Thread.java:745)
INFO - Error retrieving 3j3q from PDB
java.lang.Exception: No PDB Records for 3j3q chain ' '
at jalview.ws.dbsources.Pdb.getSequenceRecords(Pdb.java:204)
at jalview.gui.SequenceFetcher.run(SequenceFetcher.java:579)
at java.lang.Thread.run(Thread.java:745)
This suggest that