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  1. Jalview
  2. JAL-1917

unable to retrieve some pdb entries

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: 2.8.2, 2.8.2b1, 2.9
    • Fix Version/s: None
    • Labels:
      None

      Description

      The status of the PDB entry 3j3q is 'REL' and Jalview is still unable to retrieve the entry. It fails with the exception:

      INFO : jalview.bin.Jalview - Error retrieving 3j3q from PDB
      java.lang.Exception: No PDB Records for 3j3q chain ' '
      at jalview.ws.dbsources.Pdb.getSequenceRecords(Pdb.java:204)
      at jalview.gui.SequenceFetcher.run(SequenceFetcher.java:579)
      at java.lang.Thread.run(Thread.java:745)
      INFO - Error retrieving 3j3q from PDB
      java.lang.Exception: No PDB Records for 3j3q chain ' '
      at jalview.ws.dbsources.Pdb.getSequenceRecords(Pdb.java:204)
      at jalview.gui.SequenceFetcher.run(SequenceFetcher.java:579)
      at java.lang.Thread.run(Thread.java:745)

      This suggest that JAL-1852 may not be the ideal solution.

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              Assignee:
              jprocter James Procter
              Reporter:
              tcnofoegbu Tochukwu Charles N Ofoegbu
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                Created:
                Updated:
                Resolved: