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  1. Jalview
  2. JAL-1852

Disable querying of unpublished PDB entries

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 2.8.2, 2.8.2b1, 2.9
    • Fix Version/s: 2.9.0b1
    • Component/s: data retrieval services
    • Labels:
      None

      Description

      Stack trace on 2.8.2b1:
      INFO : jalview.bin.Jalview - Error retrieving 4p5y from PDB
      java.lang.Exception: No PDB Records for 4p5y chain ' '
      at jalview.ws.dbsources.Pdb.getSequenceRecords(Pdb.java:209)
      at jalview.gui.SequenceFetcher.run(SequenceFetcher.java:522)
      at java.lang.Thread.run(Thread.java:745)

      Stack trace on develop:
      INFO : jalview.bin.Jalview - Error retrieving 4p5y from PDB
      java.lang.Exception: No PDB Records for 4p5y chain ' '
      at jalview.ws.dbsources.Pdb.getSequenceRecords(Pdb.java:204)
      at jalview.gui.SequenceFetcher.run(SequenceFetcher.java:566)
      at java.lang.Thread.run(Thread.java:745)

        Attachments

        1. Snip20150924_8.png
          90 kB
          Tochukwu Charles N Ofoegbu

          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-1917 unable to retrieve some pdb entries

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              tcnofoegbu Tochukwu Charles N Ofoegbu
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                Dates

                Created:
                Updated:
                Resolved: