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  1. Jalview
  2. JAL-1821

View 3D Structure... for selection maps structures to wrong sequences

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.9
    • Component/s: pdbe, Structures
    • Labels:
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      Description

      To reproduce:
      1. Retrieve two unrelated sequenced from uniprot: P02144;LGUL_HUMAN
      2. Select them both, right click and select 'View 3D Structures..." from the popup menu
      3. Hit View for the two structures selected in the dialog box

      The Jmol view shown has both structures, but the two sequences have not been mapped to them. Opening the 'Show mapping' option in the Jmol file menu shows that every structure has been mapped to every sequence.

      What should happen is that from the PDBe View structure dialog, hitting view structures should result in those selected structures being mapped to the sequences they were shown to be mapped to.

      -> there's also a minor problem with the UI - Uniprot sequences retrieved by the sequence fetcher have 'Uniprot/Swissprot|ID1|ID2|...' type IDs, but these all appear as 'Uniprot/Swissprot' in the table.

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            Assignee:
            tcnofoegbu Tochukwu Charles N Ofoegbu
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated:
              Resolved: