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  1. Jalview
  2. JAL-1598

allow pseudoknots imported into Jalview to be visualised in VARNA

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.9
    • Component/s: Datamodel, na
    • Labels:

      Description

      Currently the way RNA base pairs are passed to VARNA removes pseudoknots and extended WUSS annotation that may correspond to sugar edge interactions. The VARNA/Jalview data interface needs to be improved to allow base pairs + type to be exchanged without dataloss.

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          Bug - A problem which impairs or prevents the functions of the product. JAL-1081 wuss parser does not cope with pseudoknots

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: