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  1. Jalview
  2. JAL-1579

cannot apply threshold to t-coffee score annotation

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 2.8, 2.8.1
    • Fix Version/s: 2.8.2
    • Component/s: gui, renderer
    • Labels:
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      Description

      Selecting 'colour by annotation' and setting a threshold for shading results in exceptions like the following appearing when the threshold is adjusted:

      Exception in thread "AWT-EventQueue-2" java.lang.NullPointerException
      at jalview.gui.AnnotationColourChooser.propagateSeqAssociatedThreshold(AnnotationColourChooser.java:684)
      at jalview.gui.AnnotationColourChooser.valueChanged(AnnotationColourChooser.java:665)
      at jalview.gui.AnnotationColourChooser$1.stateChanged(AnnotationColourChooser.java:84)
      at javax.swing.JSlider.fireStateChanged(Unknown Source)

      This exception happens for any sequence associated annotation where thresholds were not already defined - so disorder shading is not affected, but other kinds of shading (e.g. temperature factor) will be.

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Updated:
                Resolved: