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  1. Jalview
  2. JAL-1358

RNAAliFold based RNA consensus structure calculation

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    Details

    • Type: New Feature
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.8.1
    • Fix Version/s: 2.8.1
    • Component/s: JWS2
    • Labels:
      None

      Description

      Extend Jalview to support interactive calculation and display of RNA secondary structure calculated with the VIENNA suite's RNAAliFold program

        Attachments

          Issue Links

          blocks

          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-1357 Alignment based Consensus RNA secondary secondary structure calculation

          • Major - Major loss of function.
          • Open
          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-1449 RNA base pair logos not cleared if Vienna RNA structure line has no base pairs

          • Major - Major loss of function.
          • Resolved

          Task - A task that needs to be done. JAL-1364 account for gapped columns when mapping RNAalifold results to Jalview alignment

          • Blocker - Blocks development and/or testing work, production could not run.
          • Resolved

          Task - A task that needs to be done. JAL-1365 Make RNAAlifold service behave like the AACon service

          • Major - Major loss of function.
          • Resolved
          related with

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-1378 Integrate Jalview with JABAWS v2.1 Client

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              daluke Daniel Barton
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: