Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-1340

redundancy highlighting is erratic at 0% and 100%

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.8.1
    • Component/s: None
    • Labels:
      None

      Description

      Noticed by Mark Saper via Jalview Discuss:
      On 02/07/2013 18:57, Mark Saper wrote:
      > I have a problem when I attempt to remove redundancy. I select all of my sequences then click Remove Redundancy... The control window comes up set to 100, and no sequences are flagged. But when I decrease the cutoff with the slider, sequences are flagged as they should be, but when I return to 100, sequences are now flagged. I'm not sure which sequences are related by 100%? And if there is any redundancy.


      Playing with the Redundancy slider revealed the following:
      * when the slider is first opened, no sequences are highlighted until the slider is touched, even if identical sequences exist under the current alignment.
      * returning the slider to 100% after reducing it leaves some sequences highlighted - which is the confusion which Mark remarks on
      * moving slider to 0% highlights all sequences for exclusion - is this useful ?

        Attachments

          Issue Links

            Activity

              People

              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
              Votes:
              0 Vote for this issue
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: