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  1. Jalview
  2. JAL-1281

Allow one to many associations for sequence and chains in a single PDB structure

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Blocker
    • Resolution: Incomplete
    • Affects Version/s: None
    • Fix Version/s: 2.10.0
    • Component/s: Structures
    • Labels:
      None

      Description

      Issue reported by Ezequiel at
      http://www.jalview.org/pipermail/jalview-discuss/2013-March/000916.html

      Jalview only picks the best matching chain from each structure when computing the mapping between a sequence and a PDB file, which means that when two chains map to a single sequence, Jalview tends to pick the chain with the longest mapping, rather than the set of chains that map to the longest part of the sequence.

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          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-1479 PDB<->Uniprot mappings from SIFTS

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-1823 cannot specify chain code when entering specific PDB id for sequence

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Created:
                Updated:
                Resolved: