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  1. Jalview
  2. JAL-1213

use Jmol data api to parse and process structure data

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      Description

      Jmol can be operated in 'headless' mode and used to process structure data. Employing Jmol to process structures will allow Jalview to access derived quantities such as secondary structure assignments, and may also allow a more efficient sequence/structure mapping process.

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          New Feature - A new feature of the product, which has yet to be developed. JAL-584 share selections between Jmol and associated Alignment view

          • Major - Major loss of function.
          • In Progress

          New Feature - A new feature of the product, which has yet to be developed. JAL-674 display secondary structure of known structures on alignment

          • Major - Major loss of function.
          • Closed
          depends on

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1395 make core PDB parsing code independent of Jmol library availability

          • Blocker - Blocks development and/or testing work, production could not run.
          • Reopened

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Updated:
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