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  1. Jalview
  2. JAL-1115

Test and address concurrency issues arising from refactoring Vectors to access by a List interface

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      JAL-1114 involves changing sequence and annotation collections from Vectors to List<> objects. Synchronization is no longer implicit in this situation, and various exceptions appeared because we traditionally used Vectors in jalview for all collections accessed by gui and calculation threads.

      Commits relate to interactive testing where sequence edits are performed in a large (thousands of sequences) alignment and then undo/redos rapidly performed to reveal any issues with the AlignCalcWorkers.

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          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-961 Instantaneous alignment calculation API that allows extension of range of dynamic alignment analysis calculations by plugins

          • Major - Major loss of function.
          • Resolved
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1421 Java Generics are not commonly used

          • Major - Major loss of function.
          • Open

          Task - A task that needs to be done. JAL-2329 Review use of enhanced for loop for thread safety

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • In Progress

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Updated: