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  1. Jalview
  2. JAL-1075

GUI elements to select one or several DAS sources to query for sequences or database references

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    Details

    • Type: Improvement
    • Status: Resolved
    • Priority: Major
    • Resolution: Incomplete
    • Affects Version/s: None
    • Fix Version/s: 2.8, 2.8.1
    • Component/s: gui, gui design issue, jvdesktop
    • Labels:
      None

      Description

      New GUI elements are needed for the sequence fetcher and 'Fetch DB Refs' menu to allow the user to query one or many sources of information on a particular database. This is typically for situations where an ensemble of DAS sources is provided for different parts of a database's entry point space (e.g. ensembl, which provides DAS sources for each genome).

        Attachments

          Issue Links

          depends on

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1181 test and efficiently handle multiple source sequence retrievals

          • Critical - Crashes, loss of data, severe memory leak.
          • Open
          related with

          Task - A task that needs to be done. JAL-1064 refactor sequence fetcher/database name registry to support canonical database names for multiple sequence and alignment data sources

          • Major - Major loss of function.
          • Resolved

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1061 support das coordinate system matching across different das datasources

          • Major - Major loss of function.
          • Resolved

            Activity

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: