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  1. Jalview
  2. JAL-1066

extend 'colour by annotation' function to colour according to sequence associated alignment annotation

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    Details

    • Type: Epic
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 2.7, 2.8
    • Fix Version/s: 2.8, 2.8.2
    • Component/s: awt-gui, gui, renderer
    • Labels:
      None
    • Epic Name:
      colourbyannotation

      Description

      The existing jalview 'Colour by annotation' function colours all columns of the alignment with a colour defined by a single annotation row. A new colour by annotation model should be implemented that colours each row according to an alignment annotation row associated with that row's sequence which has a given name.

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          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-1065 import and visualise T-COFFEE quality scores for an alignment

          • Major - Major loss of function.
          • Resolved
          depends on

          Task - A task that needs to be done. JAL-1169 Update jalview annotation file format for new attributes

          • Blocker - Blocks development and/or testing work, production could not run.
          • Open

          Task - A task that needs to be done. JAL-1397 extend Jalview2XML to preserve colour by per-sequence annotation rows

          • Major - Major loss of function.
          • Resolved
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-1233 Colour by Annotation and RNA Helix can only be applied to all groups in alignment

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: