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  1. Jalview
  2. JAL-1028

use rnaview to retrieve annotated PDB entry as RNAML

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Incomplete
    • Affects Version/s: None
    • Fix Version/s: 2.8.2
    • Component/s: na, Structures
    • Labels:
      None

      Description

      The RNAView service provides a way to download an RNAML version of a PDB file, which includes detailed nucleic acid secondary structure annotation information.

      See eg here:
      http://paradise-ibmc.u-strasbg.fr/webservices/annotate3d?pdbid=1HR2

      Rest service documentation is here:
      http://paradise-ibmc.u-strasbg.fr/webservices/annotate3d

        Attachments

          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-1520 Display non-canonical RNA base pair interactions

          • Major - Major loss of function.
          • Open
          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-1140 Support for parsing RNAML

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1269 Update client for new version of paradise servers

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1214 use pdb ID code in place of datafile when processing structure with Annotate3d service

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: