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  1. JABAWS
  2. JWS-58

FASTA records with '>' in names are illigal for JABAWS

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.0.1
    • Component/s: None
    • Labels:
      None

      Description

      FASTA records with '>' within names cause exception with the following info:
      Exception in thread "main" java.lang.AssertionError: The FASTA sequence must contain the header information separated by the new line from the sequence. Given sequence does not appear to contain the header! Given data:
       d1xg0c_ a.1.1.3 (C:) Phycoerythrin
      at compbio.data.sequence.FastaReader.toFastaSequence(Unknown Source)
      at compbio.data.sequence.FastaReader.next(Unknown Source)
      at compbio.data.sequence.SequenceUtil.readFasta(Unknown Source)
      at compbio.ws.client.Jws2Client.align(Unknown Source)
      at compbio.ws.client.Jws2Client.<init>(Unknown Source)
      at compbio.ws.client.Jws2Client.main(Unknown Source)

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            Assignee:
            pvtroshin Peter Troshin
            Reporter:
            asherstnev Sasha Sherstnev
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              Dates

              Created:
              Updated:
              Resolved: