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  1. JABAWS
  2. JWS-47

IUPredWS service customAnalize method fails for multiple sequences of different lengths with 'not aligned' error

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.0
    • Fix Version/s: 2.0.1
    • Component/s: None
    • Labels:
      None

      Description

      Submitting a job of more than one sequence to the IUPredWS service with a custom parameter (e.g. "long") results in an exception if the sequences are of different lengths.

      Error from Jalview/JABAWS2.0 client:

      submission error with Submitting amino acid sequences for disorder prediction. :
      compbio.metadata.JobSubmissionException: All sequences must be of the same length. Please align the sequences prior to submission! The first sequence length is : 97 but the sequence 'Sequence2' length is 144
      at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
      at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
      at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
      at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
      at com.sun.xml.internal.ws.fault.SOAPFaultBuilder.createUserDefinedException(SOAPFaultBuilder.java:294)
      at com.sun.xml.internal.ws.fault.SOAPFaultBuilder.createException(SOAPFaultBuilder.java:124)
      at com.sun.xml.internal.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:108)
      at com.sun.xml.internal.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:78)
      at com.sun.xml.internal.ws.client.sei.SEIStub.invoke(SEIStub.java:107)
      at $Proxy26.customAnalize(Unknown Source)
      at jalview.ws.jws2.JabawsAlignCalcWorker.run(JabawsAlignCalcWorker.java:153)
      at java.lang.Thread.run(Thread.java:680)

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Created:
              Updated:
              Resolved: