Install on Ubuntu using tomcat6 package

Additional steps for tool installations (T-coffee, GlobPloy,Disembl)

To Get T-Coffee working
Copied in latest t_coffee binary to tcoffee directory.

To Fix error
--ERROR: : Could not set a HOME directory.Set any of the following environement variables to some suitable location: HOME, HOME_4_TCOFFEE, TMP or TEMP [FATAL:T-COFFEE]

Created
 /etc/tomcat6/default
and added
 export HOME_4_TCOFFEE=/var/lib/tomcat6/webapps/jabaws/binaries/src/tcoffee

Then changed permissions of
  /var/tmp/ t_coffee.tmp.<hostname>/
to allow tomcat read/write


To get GlobPloy and Disembl working
Error from both program I had a new version of BioPython in my path)
File "/var/lib/tomcat6/webapps/jabaws/binaries/src/globplot/GlobPlot.py", line 19, in <module>
    from Bio import Fasta
ImportError: cannot import name Fasta

Changed
 sys.path.append(newpath)
to
 sys.path.insert(1,newpath)

in both
 GlobPloy.py
and
 Disembl.py