Jronn fails when there are >3 sequences in the input Fasta file

Jronn falls over if a fasta file with >3 sequences in it is used:

ningal: ~/projects/1433predictor/disorder/Jronn> java -jar ~/bin/min-jaba-client-2.0.jar -h=http://www.compbio.dundee.ac.uk/jabaws -s=Jronnws -i=new.fasta
Connecting to JABAWS version 2 service
19-Mar-2012 11:17:57 compbio.ws.client.Jws2Client connect
INFO: Connected successfully!


calling analise.........
Exception while waiting for results. Exception details are below:
compbio.metadata.ResultNotAvailableException: compbio.data.sequence.UnknownFileFormatException: Jronn file must be in the following format:
>sequence_name
 M V S
0.43 0.22 0.65
Where first line is the sequence name,
second line is the tab delimited sequence,
third line contains tab delimited disorder prediction values.
No lines are allowed between these three. Additionally, the number of sequence residues must be equal to the number of the disorder values.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at com.sun.xml.internal.ws.fault.SOAPFaultBuilder.createUserDefinedException(SOAPFaultBuilder.java:294)
at com.sun.xml.internal.ws.fault.SOAPFaultBuilder.createException(SOAPFaultBuilder.java:124)
at com.sun.xml.internal.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:108)
at com.sun.xml.internal.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:78)
at com.sun.xml.internal.ws.client.sei.SEIStub.invoke(SEIStub.java:107)
at $Proxy24.getAnnotation(Unknown Source)
at compbio.ws.client.Jws2Client.analize(Unknown Source)
at compbio.ws.client.Jws2Client.analize(Unknown Source)
at compbio.ws.client.Jws2Client.<init>(Unknown Source)
at compbio.ws.client.Jws2Client.main(Unknown Source)