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  1. JABAWS
  2. JWS-120

IndexOutOfBoundsException raised for Disordered Predictor Jobs

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.2
    • Component/s: None
    • Labels:
      None

      Description

      Running Disordered Predictors (IUPred, GlobPlot and Disembl) raises the exception below over and over:

      May 26, 2017 11:32:54 AM com.sun.xml.ws.server.sei.EndpointMethodHandler invoke
      SEVERE: Position in a file could not be negative! Given value: -1
      java.lang.IndexOutOfBoundsException: Position in a file could not be negative! Given value: -1
      at compbio.metadata.ChunkHolder.<init>(Unknown Source)
      at compbio.ws.server.GenericMetadataService.pullExecStatistics(Unknown Source)
      at sun.reflect.GeneratedMethodAccessor124.invoke(Unknown Source)
      at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
      at java.lang.reflect.Method.invoke(Method.java:606)
      at com.sun.xml.ws.api.server.InstanceResolver$1.invoke(InstanceResolver.java:250)
      at com.sun.xml.ws.server.InvokerTube$2.invoke(InvokerTube.java:150)
      at com.sun.xml.ws.server.sei.EndpointMethodHandler.invoke(EndpointMethodHandler.java:261)
      at com.sun.xml.ws.server.sei.SEIInvokerTube.processRequest(SEIInvokerTube.java:100)
      at com.sun.xml.ws.api.pipe.Fiber.__doRun(Fiber.java:641)
      at com.sun.xml.ws.api.pipe.Fiber._doRun(Fiber.java:600)
      at com.sun.xml.ws.api.pipe.Fiber.doRun(Fiber.java:585)
      at com.sun.xml.ws.api.pipe.Fiber.runSync(Fiber.java:482)
      at com.sun.xml.ws.server.WSEndpointImpl$2.process(WSEndpointImpl.java:314)
      at com.sun.xml.ws.transport.http.HttpAdapter$HttpToolkit.handle(HttpAdapter.java:608)
      at com.sun.xml.ws.transport.http.HttpAdapter.handle(HttpAdapter.java:259)
      at com.sun.xml.ws.transport.http.servlet.ServletAdapter.invokeAsync(ServletAdapter.java:207)
      at com.sun.xml.ws.transport.http.servlet.WSServletDelegate.doGet(WSServletDelegate.java:159)
      at com.sun.xml.ws.transport.http.servlet.WSServletDelegate.doPost(WSServletDelegate.java:194)
      at com.sun.xml.ws.transport.http.servlet.WSServlet.doPost(WSServlet.java:80)
      at javax.servlet.http.HttpServlet.service(HttpServlet.java:646)
      at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
      at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
      at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
      at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
      at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
      at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
      at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
      at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
      at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501)
      at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
      at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
      at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
      at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
      at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
      at org.apache.coyote.ajp.AjpProcessor.process(AjpProcessor.java:193)
      at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607)
      at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:313)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
      at java.lang.Thread.run(Thread.java:744)

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            Assignee:
            fmmarquesmadeira Fábio Madeira
            Reporter:
            fmmarquesmadeira Fábio Madeira
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              Dates

              Created:
              Updated:
              Resolved: