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  1. JABAWS
  2. JWS-104

MafftWS cluster jobs failing

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: jabaws-internal
    • Labels:

      Description

      Mafft Jobs aren't being submitted to the cluster successfully - looks like a config issue:

      org.ggf.drmaa.DeniedByDrmException: ERROR! -c argument invalid

      at com.sun.grid.drmaa.SessionImpl.nativeRunJob(Native Method)
      at com.sun.grid.drmaa.SessionImpl.runJob(SessionImpl.java:349)
      at compbio.engine.cluster.drmaa.ClusterRunner.submitJob(Unknown Source)
      at compbio.engine.cluster.drmaa.AsyncClusterRunner.submitJob(Unknown Source)
      at compbio.ws.server.WSUtil.align(Unknown Source)
      at compbio.ws.server.MafftWS.align(Unknown Source)
      at sun.reflect.GeneratedMethodAccessor182.invoke(Unknown Source)
      at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
      at java.lang.reflect.Method.invoke(Method.java:606)

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Updated:
              Resolved: