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  1. Jalview
  2. JAL-941

pick best matching PDB chain from many PDBs for a sequence

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.7, 2.8, 2.9, 2.10.1, 2.10.2
    • Fix Version/s: None
    • Component/s: analysis, pdbe, Structures
    • Labels:
      None

      Description

      When PDBs are dragged or otherwise associated with one or more sequences on an alignment, Jalview should try to pick the best association based on all available information, not just a match between the filename and the sequence Identifier but also by sequence identity.

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          Issue Links

          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-732 automatically associate PDB files dragged onto an alignment with sequences that have high similarity and matching IDs

          • Major - Major loss of function.
          • Resolved

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1711 allow PDB chain code to be specified when entering a specific PDB ID for a sequence

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: