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  1. Jalview
  2. JAL-88

Uniprot/SwissProt name inconsistencies.

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: web service bug
    • Labels:
      None
    • Mantis ID:
      8433

      Description

      The old srs query used by jalview was this:
      http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[swall-id:ADHR_DROPS]+-vn+2
      However, ADHR_DROPS is a uniprot name - not an accession number, and some people prefer to work with the accession numbers - which will not work with this query.

      We could try this one:
      http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-newId+(([uniprot-all:P14938]))+-view+SwissEntry

      Which seems to take both forms of naming.

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            Assignee:
            amwaterhouse Andrew Waterhouse
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated:
              Resolved: