Details
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Type: New Feature
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Status: Open
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Priority: Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Component/s: file format issue, jvlite, Scriptable API, Structures
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Labels:None
Description
Extend the PDBFile applet parameter to allows you to do something like :
<param name="PDBFile1" value="FER1_MAIZE paste:HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 08-MAY-00 1GAQ
ATOM 2 CA GLU A 19 20.491 30.713 36.290 1.00 74.29 C
ATOM 11 CA SER A 20 24.056 29.774 37.264 1.00 72.09 C
ATOM 17 CA LYS A 21 27.517 31.289 37.563 1.00 70.09 C
ATOM 26 CA LYS A 22 28.794 27.865 36.481 1.00 68.64 C
ATOM 35 CA GLN A 23 29.484 26.806 32.884 1.00 70.46 C
ATOM 44 CA GLU A 24 26.420 25.175 31.360 1.00 72.08 C
ATOM 53 CA GLU A 25 26.736 26.049 27.683 1.00 70.43 C
..
">
to associated raw pdb data to the FER1_MAIZE sequence.
idea came from request from Jeanre Smit (http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/2011-March/000569.html)
<param name="PDBFile1" value="FER1_MAIZE paste:HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 08-MAY-00 1GAQ
ATOM 2 CA GLU A 19 20.491 30.713 36.290 1.00 74.29 C
ATOM 11 CA SER A 20 24.056 29.774 37.264 1.00 72.09 C
ATOM 17 CA LYS A 21 27.517 31.289 37.563 1.00 70.09 C
ATOM 26 CA LYS A 22 28.794 27.865 36.481 1.00 68.64 C
ATOM 35 CA GLN A 23 29.484 26.806 32.884 1.00 70.46 C
ATOM 44 CA GLU A 24 26.420 25.175 31.360 1.00 72.08 C
ATOM 53 CA GLU A 25 26.736 26.049 27.683 1.00 70.43 C
..
">
to associated raw pdb data to the FER1_MAIZE sequence.
idea came from request from Jeanre Smit (http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/2011-March/000569.html)
Attachments
Issue Links
- depends on
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JAL-623 pdb structure imported from paste to alignment not loaded into new Jmol window
- Open