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  1. Jalview
  2. JAL-789

allow the alignment parameters and score matrix to be set for a pairwise sequence alignment

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      Description

      The jalview parameter GUI could be used to allow the user to choose and control the parameters under which pairwise sequence alignments are performed. The same user preset model could also be used, enabling them to store their favourite parameter settings.

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          is duplicated by

          Improvement - An improvement or enhancement to an existing feature or task. JAL-4466 allow pairwise alignment gap parameters to be adjusted

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open
          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-2416 Load score matrices from file or resource file

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-4159 PaSiMap inclusion

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1632 Dialog to create/edit tree calculation settings

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-4447 Improved reporting of analysis parameters in PCA, Pairwise alignment and others

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Created:
                Updated: