Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-773

positional search results are only highlighted between user-supplied sequence start/end bounds

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.7
    • Component/s: Datamodel, gui
    • Labels:
      None

      Description

      The user can supply their own sequence bounds using the /start-end notation.

      The sequenceI.findIndex(sequencePosition) method honours the user-provided 'end' attribute and returns the alignment position of the end'th residue, rather than examining the sequence string for further non-gap characters which may correspond to the requested location (sequencePosition).

        Attachments

          Issue Links

          blocks

          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-772 Find sequence position moves to wrong residue with/without hidden columns

          • Major - Major loss of function.
          • Resolved
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-774 end attribute of sequence is not validated

          • Major - Major loss of function.
          • Resolved

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
              Votes:
              0 Vote for this issue
              Watchers:
              0 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: