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  1. Jalview
  2. JAL-753

allow sequences with partial ID string matches to be annotated from GFF/jalview features files

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    Details

    • Type: Improvement
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.7
    • Component/s: JVL-Ajax, jvlite
    • Labels:
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      Description

      Occasionally, sequence IDs within an alignment are formed as compound ID strings like 'uniprot|q12456|pdb|1xyz|long name'. The jalview.analysis.SequenceIdMatcher includes routines for matching a single ID against such compound strings, and it would be useful to optionally employ this matcher when importing sequence annotation.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Updated:
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