Details
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Type: Bug
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Status: Resolved
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Priority: Minor
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Resolution: Fixed
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Affects Version/s: None
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Fix Version/s: 2.4
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Component/s: Feature Request
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Labels:None
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Mantis ID:8216
Description
The current query method uses the whole of the sequence ID string as a text query to srs over uniprot. This can break (try having pdb: in the id string) in may ways, or at least not retrieve what the user might want.
If there is no associated database ID for a sequence, then it should be possible to specify how the ID string is transformed into a particular query. This could go further to have a set of regex's :
1. http:query? Regex->Query transform
2. ...
Where the query applied for a particular sequence is the first one that yields a proper regex transformation match.
If there is no associated database ID for a sequence, then it should be possible to specify how the ID string is transformed into a particular query. This could go further to have a set of regex's :
1. http:query? Regex->Query transform
2. ...
Where the query applied for a particular sequence is the first one that yields a proper regex transformation match.
Attachments
Issue Links
- related with
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JAL-254 Sequence IDs containing both uniprot name and accession code do not work for discover PDB ids
- Resolved