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  1. Jalview
  2. JAL-57

User definable regex for forming the swissprot entry retrieval query from sequence ID

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.4
    • Component/s: Feature Request
    • Labels:
      None
    • Mantis ID:
      8216

      Description

      The current query method uses the whole of the sequence ID string as a text query to srs over uniprot. This can break (try having pdb: in the id string) in may ways, or at least not retrieve what the user might want.

      If there is no associated database ID for a sequence, then it should be possible to specify how the ID string is transformed into a particular query. This could go further to have a set of regex's :
         1. http:query? Regex->Query transform
         2. ...
      Where the query applied for a particular sequence is the first one that yields a proper regex transformation match.

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Created:
                Updated:
                Resolved: