clustalx colourscheme colours Ds preferentially when both D+E are present in over 50% of the column

On 13/05/2010 18:31, Rein Aasland wrote:
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> Dear Jalview team,
>
> May I suggest that there is a small bug in the Clustalx colouring scheeme, - and, if I'm not wrong, it comes from the original Clustalx team (as I know it was there when they made it, - and I corrected my own coding scheeme for my running version). Anyway, - it is as follows:
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> In columns with conserved (major) Asp (D), Glu's doesn't get coloured (which they should; negatives!). The reverse situation is ok (i.e. D's in columns with conserved/major E's DO get coloured.
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> I include a snapshot from my alignment at hand, - but you really don't need any sample, as any D/E-rich alignment with reveal this.
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> Cheers
>
> Rein
>