Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-531

csv output of conservation does not include the percentage of the consensus symbol by default

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 2.5
    • Fix Version/s: 2.5.1
    • Component/s: None
    • Labels:
      None

      Description

      From Jalview discuss (Hari Jayam: "Show values in Textbox" May 10th)

      Hi I have a saved alignement generated from the clustalw service at EMBL-EBI.
      When I launch Jalview from the clustalw site - I click on the
      consensus and be presented with a "Show values in textbox" option
      which then prints to a textbox the following information ( see below).
      The second line of this information which indicates the consensus
      sequence and the percentage conservation at that point.

      This feature is however not available in jalview 2.5 . How can I open
      any saved alignment in jalview 2.5 and obtain the consensus
      percentage for each position in the alignment for use in another
      downstream analysis program.

      Thanks
      Hari

        Attachments

          Activity

            People

            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
            Votes:
            0 Vote for this issue
            Watchers:
            0 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: