Details
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Type: Bug
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Status: Resolved
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Priority: Critical
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Resolution: Fixed
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Affects Version/s: 2.5
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Fix Version/s: 2.5.1
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Component/s: None
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Labels:None
Description
From Jalview discuss (Hari Jayam: "Show values in Textbox" May 10th)
Hi I have a saved alignement generated from the clustalw service at EMBL-EBI.
When I launch Jalview from the clustalw site - I click on the
consensus and be presented with a "Show values in textbox" option
which then prints to a textbox the following information ( see below).
The second line of this information which indicates the consensus
sequence and the percentage conservation at that point.
This feature is however not available in jalview 2.5 . How can I open
any saved alignment in jalview 2.5 and obtain the consensus
percentage for each position in the alignment for use in another
downstream analysis program.
Thanks
Hari
Hi I have a saved alignement generated from the clustalw service at EMBL-EBI.
When I launch Jalview from the clustalw site - I click on the
consensus and be presented with a "Show values in textbox" option
which then prints to a textbox the following information ( see below).
The second line of this information which indicates the consensus
sequence and the percentage conservation at that point.
This feature is however not available in jalview 2.5 . How can I open
any saved alignment in jalview 2.5 and obtain the consensus
percentage for each position in the alignment for use in another
downstream analysis program.
Thanks
Hari