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  1. Jalview
  2. JAL-500

exploit or emulate blast2similarity graph plugin for cytoscape

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Minor
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Feature Request
    • Labels:
      None
    • Mantis ID:
      61281

      Description

      From danhitchcock@neo.tamu.edu:

      7. This suggestion is kind of out there, but I use jalview mainly for looking at groups in cytoscape. If there was any way to tie-in to the cytoscape plug in blast 2 similarity graph, that would be amazing. Of course this woul dbe more of a project than a small suggestion but it would be incredibly useful.

      My Response:
      The major feature in the jalview road map is to adopt the same java plugin architecture that is used by tools like Cytoscape and Taverna. I hope to make significant steps towards this by Summer 2010 - with the result that it should be much easier to use Jalview and cytoscape components together. If you know of anyone interested in this, then please do put them in contact - since I'm not really a cytoscape user.

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            Assignee:
            Unassigned Unassigned
            Reporter:
            jprocter Jim Procter
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