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  1. Jalview
  2. JAL-485

pdb files without identifier cannot be opened in the structure viewer

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 2.4.0b2
    • Fix Version/s: 2.5
    • Component/s: None
    • Labels:
      None
    • Mantis ID:
      60066

      Description


      a pdb file retrieved from a URL like:

      http://10.21.0.54/~Kersten/aligned_to_Kt7/2AVY_EcKt23.pdb
      (attached)

      cannot be shown in the Jmol view. In the applet, when its associated with a sequence in an alignment, a null pointer exception is raised.
      In the application :
      Message on stdout when 'View structure' attempted for URL imported as alignment is:
      Ignoring invalid pdb query: 'PDBF'

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Dates

              Created:
              Updated:
              Resolved: