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  1. Jalview
  2. JAL-483

informative colouring of sequence id

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Feature Request
    • Labels:
      None
    • Mantis ID:
      60052

      Description

      Sequence ID colours are transferred to trees and PCA plots, and very useful to visually indicate the distribution of a particular attribute amongst the sequences in the alignment.

      Currently, they are assigned either via the annotation file or randomly via the tree partition. It would also be useful to :
      Colour sequence ID by a specific feature or annotation:
       * colourschemes associated with
         - non-positional features (score, label, density of non-pos annotation)
         - sequence associated annotation rows

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              Assignee:
              Unassigned Unassigned
              Reporter:
              jprocter Jim Procter
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                Dates

                Created:
                Updated: