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  1. Jalview
  2. JAL-4675

Allow matches between CDS and Protein where codons & amino acids are unknown

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.12.1
    • Component/s: cds/protein
    • Labels:
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      Description

      Jalview should gracefully cope with creating CDS/Protein relationships with unknown regions:

      >gene1/1-84
      CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGC
      >gene1/1-27
      QXXXXXXXXXXXXXXXXXXXXXXXXXXG

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-4179 Common nucleotide symbols turns sequence into 'protein', cannot set colour to 'nucleotide'

          • Major - Major loss of function.
          • Open

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: