Details
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Type:
New Feature
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Status: Open
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: 2.12
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Component/s: file format issue, na, Structures
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Labels:None
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Epic Link:
Description
LBN - currently being formalised at the https://github.com/na-hackathon/na-hackathon-2026/issues/23 (see spec at https://github.com/na-hackathon/na-hackathon-2026/issues/23#issuecomment-4517009427).
Extended Fasta like format structured format with structured header, and colon separated tagged payload:
>title: chain <code>(start-end)[, chain <code>(start-end)]+
seq : <SEQ..>[&<SEQ..>]+
<bpt_1> : <WUSS>[&<WUSS>]+
<bpt_n> : <WUSS>[&<WUSS>]+
Pairing coordinate system is defined on the 'seq' line beginning with the column that is the first non-white space character (or could be at most one space after colon before start of (extended)WUSS-style dbn.
<bpt> are LW-base pair classification codes (see https://nakb.org/basics/bases.html). Convention is that canonical (cWW) interactions are specified first.
Extended Fasta like format structured format with structured header, and colon separated tagged payload:
>title: chain <code>(start-end)[, chain <code>(start-end)]+
seq : <SEQ..>[&<SEQ..>]+
<bpt_1> : <WUSS>[&<WUSS>]+
<bpt_n> : <WUSS>[&<WUSS>]+
Pairing coordinate system is defined on the 'seq' line beginning with the column that is the first non-white space character (or could be at most one space after colon before start of (extended)WUSS-style dbn.
<bpt> are LW-base pair classification codes (see https://nakb.org/basics/bases.html). Convention is that canonical (cWW) interactions are specified first.
Attachments
Issue Links
- related with
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JAL-4678 specify chains to map when loading a structure from file
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- Open
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- mentioned on
(4 mentioned on)