Details
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Type:
New Feature
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Status: Open
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: 2.12.0, 2.11.5.1
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Fix Version/s: 2.12.1
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Component/s: data retrieval services, Datamodel, Structures
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Labels:None
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Epic Link:
Description
Jalview could peek inside imported mmCIF files to look for additional metadata added by tools like FR3D and DNATCO.
As a starting point, we can look for additional data directly using the Jmol cif parser's internal datamodel:
cifinfo = getProperty("cifInfo")
print cifinfo
print cifinfo.keys
print cifinfo.models[1].keys
print cifinfo.models[1]._ndb_base_pair_annotation_id
print cifinfo.models[1]._ndb_struct_conf_na_feature
As a starting point, we can look for additional data directly using the Jmol cif parser's internal datamodel:
cifinfo = getProperty("cifInfo")
print cifinfo
print cifinfo.keys
print cifinfo.models[1].keys
print cifinfo.models[1]._ndb_base_pair_annotation_id
print cifinfo.models[1]._ndb_struct_conf_na_feature