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  1. Jalview
  2. JAL-4668

Conservation Colour slider says "% identity", and shows a percentage rather than descrete values 0-9

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.5.1
    • Fix Version/s: None
    • Component/s: gui
    • Labels:
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      Description

      Open an alignment and apply a colour scheme.

      Open Colour -> By Conservation and a popup frame appears (with title starting "Conservation Colour")

      The frame says "Enter %identity above which to colour residues" and presents a slider/number box ranging from 0 to 100.
      This should say "Enter conservation value above which to colour residues" with a discrete slider/number box with integers 0 to 9.

      Also, sliding the current slider (0 to 100) gives a continuous change in transparency to colour -- this suggests to me the calculation is not based on a 0-9 integer value, although it is doing something different to "Colour -> Above Identity Threshold"

      I think the actual Conservation threshold colouring can be performed with Colour -> By Annotation... and then choose "Conservation" and "Above Threshold". This frame's slider/number box then goes from 0 to 11.

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            Assignee:
            jprocter James Procter
            Reporter:
            geoff.barton Geoff Barton
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              Dates

              Created:
              Updated: