Details
-
Type:
Bug
-
Status: Open
-
Priority:
Minor
-
Resolution: Unresolved
-
Affects Version/s: 2.11.5.0
-
Fix Version/s: 2.12.0
-
Component/s: sequencefeatures
-
Labels:None
Description
In some situations, the 'variant only' feature settings configuration that is set up when a new CDS/Protein view is opened is immediately lost when the Feature Settings dialog is opened.
Reproduce:
1. First retrieve an ensembl locus and annotate it with variants from a VCF file (e.g. via https://www.jalview.org/tutorial/exercises/ex-30-G2F-VCF-File-Filtering-Features/ ).
2. Make sure exons are disabled in the view.
3. Select Calculations->Get Crossreferences->Uniprot to show the CDS/Protein view. It should just show the variants.
4. Select View->Feature Settings - when the dialog opens, the CDS and exon features will be enabled for display on the CDS view.
This does not happen if the initial Ensembl locus does not have variants added to it beforehand.
Reproduce:
1. First retrieve an ensembl locus and annotate it with variants from a VCF file (e.g. via https://www.jalview.org/tutorial/exercises/ex-30-G2F-VCF-File-Filtering-Features/ ).
2. Make sure exons are disabled in the view.
3. Select Calculations->Get Crossreferences->Uniprot to show the CDS/Protein view. It should just show the variants.
4. Select View->Feature Settings - when the dialog opens, the CDS and exon features will be enabled for display on the CDS view.
This does not happen if the initial Ensembl locus does not have variants added to it beforehand.