Details
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Type:
Bug
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Status: Open
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: 2.11.4.1
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Fix Version/s: None
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Component/s: file format issue, trees
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Labels:
Description
Serratus exports alignments and trees for various loci, these typically have taxon names after an identifier like "u12334|Taxon name" - however jalview splits off the ' name' bit and adds it to the description. See e.g. https://serratus.io/trees
importing an alignment and then adding its corresponding tree results in leaf nodes with ' ' in their taxon name left unassociated. This shouldn't really happen because 'u12334|Taxon' should be enough to unambiguously match up leaf with sequence - but Jalview doesn't seem to be splitting leaf names up in the same way as it does sequence IDs.
importing an alignment and then adding its corresponding tree results in leaf nodes with ' ' in their taxon name left unassociated. This shouldn't really happen because 'u12334|Taxon' should be enough to unambiguously match up leaf with sequence - but Jalview doesn't seem to be splitting leaf names up in the same way as it does sequence IDs.