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  1. Jalview
  2. JAL-4486

secondary structure annotation not mapped correctly to sequence for some structures

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Blocker
    • Resolution: Unresolved
    • Affects Version/s: 2.11.4.0, 2.11.4.1
    • Fix Version/s: 2.11.5.0
    • Component/s: Structures
    • Labels:
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      Description

      1. Import PK3CA_HUMAN from Uniprot.
      2. View PDB 3hhm.
      3. Add reference annotations.
      4. Colour by secondary structure (via the colour by option in the annotation label popup).

      The sequence-structure mapping is correct (starts at position 5 in structure), but the annotations derived from structure are shifted by 21 aa.

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          depends on

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2007 Use PDBe numbering for sequences extracted from PDB files

          • Major - Major loss of function.
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              Assignee:
              Unassigned Unassigned
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: