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  1. Jalview
  2. JAL-4475

allow cross-reference retrieval for loci from ensembl to Uniparc and other databases

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    • Type: Improvement
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
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      Description

      EnsemblProtists and other databases often have cross-references for their protien coding regions to other databases than Uniprot, but there are still rich sets of 'predicted' annotation for those proteins. See e.g.
      Tb927.3.1990 -> http://protists.ensembl.org/Trypanosoma_brucei/Transcript/Domains?db=core;g=Tb927.3.1990;r=3:516029-526283;t=AAZ10234

      In jalview, the gene + transcript are returned, but since these have Uniparc entries rather than Uniprot, they do not get a 'show cross-references' option under 'Calculations'.

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            Reporter:
            jprocter James Procter
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              Updated: