Details
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Type:
Bug
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Status: Closed
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Priority:
Major
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Resolution: Fixed
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Affects Version/s: 2.11.3.3
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Fix Version/s: 2.11.4.0
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Component/s: awt-gui
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Labels:None
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Environment:Jalview Version: 2.11.3.3
Jalview Installation: Source git-commit:24ed4dabf2 [releases/Release_2_11_3_Branch]
Build Date: 21:30:12 21 May 2024
Java version: 1.8.0_372
Java platform: amd64 Windows 11 10.0
Install4j version: 10.0.7
Install4j template version: 2.11.3.3_F66d9900a_C24ed4dabf2
Launcher version: 1.8.3-1.3.1_JVL
LookAndFeel: FlatLaf Light (com.formdev.flatlaf.FlatLightLaf)
Channel: release
Jalview Version: 2.11.3.3 Jalview Installation: Source git-commit:24ed4dabf2 [releases/Release_2_11_3_Branch] Build Date: 21:30:12 21 May 2024 Java version: 1.8.0_372 Java platform: amd64 Windows 11 10.0 Install4j version: 10.0.7 Install4j template version: 2.11.3.3_F66d9900a_C24ed4dabf2 Launcher version: 1.8.3-1.3.1_JVL LookAndFeel: FlatLaf Light (com.formdev.flatlaf.FlatLightLaf) Channel: release
Description
Steps:
1. Installed jalview in user default location from Windows installer.
2. Start jalview - example file appears. Everything looks good - can quit as normal.
2. Start Jalview again - this time select a different alignment view and apply a colourscheme change before trying to quit (nb. changing colourscheme in the 'Original' view DOES NOT trigger the 'Do you wan't to quit')
3. ENABLE 'TRACE' in Jalview Java Console
4. Hit the 'Close' desktop icon, or File->Quit - the warning dialog appears.
5. Select 'Quit' to quit without saving.
Jalview doesn't quit. In fact any attempt to quit again or quit the specific Jalview process from the task manager fails. The JVM has to be terminated via the task manager to make the window disappear from the desktop.
TRACE console output below
Jalview Version: 2.11.3.3
Jalview Installation: Source git-commit:24ed4dabf2 [releases/Release_2_11_3_Branch]
Build Date: 21:30:12 21 May 2024
Java version: 1.8.0_372
Java platform: amd64 Windows 11 10.0
Install4j version: 10.0.7
Install4j template version: 2.11.3.3_F66d9900a_C24ed4dabf2
Launcher version: 1.8.3-1.3.1_JVL
LookAndFeel: FlatLaf Light (com.formdev.flatlaf.FlatLightLaf)
Channel: release
INFO - Cannot set Taskbar
ERROR - java/awt/Taskbar
WARN - Error when running commands
DEBUG - >>Jmol>> History on
DEBUG - <<Jmol<< pending
DEBUG - >>Jmol>> select 61: /1;wireframe 100;select 61: /1 and not hetero;spacefill 200;select none
DEBUG - <<Jmol<< pending
DEBUG - >>Jmol>> History on
DEBUG - <<Jmol<< pending
DEBUG - Returning overall stateSavedUpToDate value: false
DEBUG - Returning 320384478151568937654061410986843360468560926015613752515439846562697183473475500359962506060972234181251971894346.3082358739670237879784822408527693207 savedUpToDate value: false
DEBUG - Jalview property 'CONFIRM_KEYBOARD_QUIT' is/defaults to true -- confirming quit
DEBUG - QuitHandler: (default) Quit action CANCELLED by user
DEBUG - Quit cancelled
DEBUG - QuitHandler: (default) Quit action CONFIRMED by user
1. Installed jalview in user default location from Windows installer.
2. Start jalview - example file appears. Everything looks good - can quit as normal.
2. Start Jalview again - this time select a different alignment view and apply a colourscheme change before trying to quit (nb. changing colourscheme in the 'Original' view DOES NOT trigger the 'Do you wan't to quit')
3. ENABLE 'TRACE' in Jalview Java Console
4. Hit the 'Close' desktop icon, or File->Quit - the warning dialog appears.
5. Select 'Quit' to quit without saving.
Jalview doesn't quit. In fact any attempt to quit again or quit the specific Jalview process from the task manager fails. The JVM has to be terminated via the task manager to make the window disappear from the desktop.
TRACE console output below
Jalview Version: 2.11.3.3
Jalview Installation: Source git-commit:24ed4dabf2 [releases/Release_2_11_3_Branch]
Build Date: 21:30:12 21 May 2024
Java version: 1.8.0_372
Java platform: amd64 Windows 11 10.0
Install4j version: 10.0.7
Install4j template version: 2.11.3.3_F66d9900a_C24ed4dabf2
Launcher version: 1.8.3-1.3.1_JVL
LookAndFeel: FlatLaf Light (com.formdev.flatlaf.FlatLightLaf)
Channel: release
INFO - Cannot set Taskbar
ERROR - java/awt/Taskbar
WARN - Error when running commands
DEBUG - >>Jmol>> History on
DEBUG - <<Jmol<< pending
DEBUG - >>Jmol>> select 61: /1;wireframe 100;select 61: /1 and not hetero;spacefill 200;select none
DEBUG - <<Jmol<< pending
DEBUG - >>Jmol>> History on
DEBUG - <<Jmol<< pending
DEBUG - Returning overall stateSavedUpToDate value: false
DEBUG - Returning 320384478151568937654061410986843360468560926015613752515439846562697183473475500359962506060972234181251971894346.3082358739670237879784822408527693207 savedUpToDate value: false
DEBUG - Jalview property 'CONFIRM_KEYBOARD_QUIT' is/defaults to true -- confirming quit
DEBUG - QuitHandler: (default) Quit action CANCELLED by user
DEBUG - Quit cancelled
DEBUG - QuitHandler: (default) Quit action CONFIRMED by user