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  1. Jalview
  2. JAL-4422

improve space and time efficiency for comparison and redundancy calculations

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.4, 2.12
    • Component/s: analysis
    • Labels:

      Description

      There are a number of ugly truths in Jalview's code where:
      * Strings are created and used to represent all or part of SequenceI, often repeatedly for the same SequenceI
      -- often both strings and SequenceI instances are passed around together, saving time but not memory
      * Symmetric matrices are calculated and stored as full rectangular matrices

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Dates

              Created:
              Updated: