Details
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Type:
Bug
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Status: Open
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Priority:
Trivial
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Resolution: Unresolved
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Affects Version/s: 2.11.3.2
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Fix Version/s: None
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Component/s: annotation
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Labels:None
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Environment:MacOS
Description
Hi,
I am running a MSA of 1050 sequences for my protein of interest which is 33 amino acids in length. Strangely my quality annotation track is showing 0 for the 33rd residue. For my POI the 33rd residue is E and this is maintained in over 800 of the sequences. The others are mostly gaps or Xs with a few stops, Ys and one K. Given the method behind the quality scores I can't seem to figure out why this is 0.
Would greatly appreciate any help on this!
Many thanks
I am running a MSA of 1050 sequences for my protein of interest which is 33 amino acids in length. Strangely my quality annotation track is showing 0 for the 33rd residue. For my POI the 33rd residue is E and this is maintained in over 800 of the sequences. The others are mostly gaps or Xs with a few stops, Ys and one K. Given the method behind the quality scores I can't seem to figure out why this is 0.
Would greatly appreciate any help on this!
Many thanks