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  1. Jalview
  2. JAL-4416

Structure view is not shown when loading local structure file for a sequence

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Incomplete
    • Affects Version/s: 2.11.3.0, 2.11.3.1, 2.11.3.2
    • Fix Version/s: 2.11.3.3
    • Component/s: Structures
    • Labels:

      Description

      Import the following sequence:
      >1GAQ|A/19-314
      ESKKQEEGVVTNLYKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEGKIPYREGQSIGVIADGVDKNGKPH
      KVRLYSIASSAIGDFGDSKTVSLCVKRLIYTNDAGEIVKGVCSNFLCDLQPGDNVQITGPVGKEMLMPKDPN
      ATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLGWLFLGVPTSSSLLYKEEFGKMKERAPENFRVDYAVS
      REQTNAAGERMYIQTRMAEYKEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAEKDGIDWFDYKKQLKRG
      DQWNVEVY

      Now:
      1. right-click and select 3D structure data...
      2. Select 'From file' from the dropdown menu
      3. Choose '1gaq.txt' from the examples directory.
      4. Select 'Open new structure with Jmol'

      A structure view should be opened, and (ideally - JAL-4415 willing) - annotations are added and shown on the alignment for secondary stucture and disorder.

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Dates

              Created:
              Updated:
              Resolved: